STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dpf1Zinc finger protein neuro-d4. (819 aa)    
Predicted Functional Partners:
smarcb1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1.
   
 0.987
Smarce1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1.
   
 0.983
Smarcd1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1.
   
 0.970
osa
Trithorax group protein osa.
    
 0.959
SMARCA4
Transcription activator BRG1.
    
 0.955
Smarcc2
SWI/SNF complex subunit SMARCC2.
    
 0.950
C08B11.3
ARID domain-containing protein C08B11.3.
    
 0.947
phf10
PHD finger protein 10.
    
0.898
PBRM1
Protein polybromo-1.
    
 0.870
PBRM1-2
Protein polybromo-1.
    
 0.870
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.