STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zcchc8Zinc finger CCHC domain-containing protein 8. (441 aa)    
Predicted Functional Partners:
Rbm7
RNA-binding protein 7.
    
 
 0.991
SKIV2L2
Superkiller viralicidic activity 2-like 2.
    
 
 0.972
NCBP2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. In the CBC complex, ncbp-2 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requires ncbp-1 to stabilize the movement of its N-terminal loop and lock the CBC into a high affinity cap-binding state with the cap structure.
    
 
 0.675
EXOSC8
3' exoribonuclease family, domain 1.
    
 
 0.647
EXOSC7
Exosome complex component RRP42.
   
 
 0.639
EXOSC4
Exosome complex component RRP41.
    
 
 0.611
IPO7
Importin-7.
    
 
 0.598
SKIV2L
Helicase SKI2W.
    
 
 0.598
Pgls
Exosome complex component RRP4.
    
 
 0.535
c1d
Nuclear nucleic acid-binding protein C1D.
    
 
 0.531
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.