STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CXXC1CpG-binding protein. (549 aa)    
Predicted Functional Partners:
setd1b
Histone-lysine N-methyltransferase SETD1B.
   
 0.998
ASH2L
Set1/Ash2 histone methyltransferase complex subunit ASH2.
   
 0.998
RBBP5
Retinoblastoma-binding protein 5.
    
 0.998
dpy-30
Dosage compensation protein dpy-30.
    
 0.987
wdr82-a
WD repeat-containing protein 82-A.
    
 0.817
WDR82
WD repeat-containing protein 82.
    
 0.817
WDR82-2
WD repeat-containing protein 82.
    
 0.817
wdr82
WD repeat-containing protein 82.
    
 0.817
Smarcc2
SWI/SNF complex subunit SMARCC2.
    
 
 0.807
smarcb1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1.
    
 
 0.770
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.