chordc1 protein (Trichinella nativa) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

chordc1

Cysteine and histidine-rich domain-containing protein 1. (308 aa)

Predicted Functional Partners:

SUGT1

0.956

T02_8057

0.941

HSP90B1

0.940

Hsp90aa1

0.810

Hsp83

0.810

Trap1

0.802

Tsc1

0.802

Tsc1-2

0.802

AHSA1

0.613

CDC27

0.528

Your Current Organism:

Trichinella nativa

NCBI taxonomy Id: 6335
Other names: T. nativa

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AHSA1	HSP90B1	A0A0V1LTL2	A0A0V1LNN7	Activator of 90 kDa heat shock protein ATPase-like protein 1.	Endoplasmin.	0.844
AHSA1	Hsp83	A0A0V1LTL2	A0A0V1L145	Activator of 90 kDa heat shock protein ATPase-like protein 1.	Heat shock protein 83.	0.876
AHSA1	Hsp90aa1	A0A0V1LTL2	A0A0V1KKA0	Activator of 90 kDa heat shock protein ATPase-like protein 1.	Heat shock protein HSP 90-alpha.	0.876
AHSA1	SUGT1	A0A0V1LTL2	A0A0V1L8K3	Activator of 90 kDa heat shock protein ATPase-like protein 1.	Suppressor of G2 allele of SKP1-like protein.	0.552
AHSA1	T02_8057	A0A0V1LTL2	A0A0V1LSF4	Activator of 90 kDa heat shock protein ATPase-like protein 1.	Serine/threonine-protein phosphatase 5.	0.603
AHSA1	Trap1	A0A0V1LTL2	A0A0V1L5M4	Activator of 90 kDa heat shock protein ATPase-like protein 1.	Heat shock protein 75 kDa, mitochondrial.	0.819
AHSA1	Tsc1	A0A0V1LTL2	A0A0V1L9C2	Activator of 90 kDa heat shock protein ATPase-like protein 1.	Hamartin.	0.819
AHSA1	Tsc1-2	A0A0V1LTL2	A0A0V1LRR7	Activator of 90 kDa heat shock protein ATPase-like protein 1.	Hamartin.	0.819
AHSA1	chordc1	A0A0V1LTL2	A0A0V1LPX2	Activator of 90 kDa heat shock protein ATPase-like protein 1.	Cysteine and histidine-rich domain-containing protein 1.	0.613
CDC27	HSP90B1	A0A0V1LK38	A0A0V1LNN7	Cell division cycle protein 27-like protein.	Endoplasmin.	0.669
CDC27	Hsp83	A0A0V1LK38	A0A0V1L145	Cell division cycle protein 27-like protein.	Heat shock protein 83.	0.669
CDC27	Hsp90aa1	A0A0V1LK38	A0A0V1KKA0	Cell division cycle protein 27-like protein.	Heat shock protein HSP 90-alpha.	0.669
CDC27	SUGT1	A0A0V1LK38	A0A0V1L8K3	Cell division cycle protein 27-like protein.	Suppressor of G2 allele of SKP1-like protein.	0.406
CDC27	Trap1	A0A0V1LK38	A0A0V1L5M4	Cell division cycle protein 27-like protein.	Heat shock protein 75 kDa, mitochondrial.	0.669
CDC27	Tsc1	A0A0V1LK38	A0A0V1L9C2	Cell division cycle protein 27-like protein.	Hamartin.	0.669
CDC27	Tsc1-2	A0A0V1LK38	A0A0V1LRR7	Cell division cycle protein 27-like protein.	Hamartin.	0.669
CDC27	chordc1	A0A0V1LK38	A0A0V1LPX2	Cell division cycle protein 27-like protein.	Cysteine and histidine-rich domain-containing protein 1.	0.528
HSP90B1	AHSA1	A0A0V1LNN7	A0A0V1LTL2	Endoplasmin.	Activator of 90 kDa heat shock protein ATPase-like protein 1.	0.844
HSP90B1	CDC27	A0A0V1LNN7	A0A0V1LK38	Endoplasmin.	Cell division cycle protein 27-like protein.	0.669
HSP90B1	Hsp83	A0A0V1LNN7	A0A0V1L145	Endoplasmin.	Heat shock protein 83.	0.774