STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Egln1Egl nine-like protein 1. (389 aa)    
Predicted Functional Partners:
T02_4942
Hypoxia-inducible factor 1.
    
 0.996
pkc-2
Protein kinase C.
    
 0.820
cul-2
Cullin-2; Belongs to the cullin family.
     
 0.737
jub
LIM domain-containing protein jub.
    
 0.731
Tceb1
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
     
 0.727
Tceb1-2
Transcription elongation factor B polypeptide 1; Belongs to the SKP1 family.
     
 0.727
rbx1
RING-box protein 1.
     
 0.678
let-70
Ubiquitin-conjugating enzyme E2 2; Belongs to the ubiquitin-conjugating enzyme family.
     
 0.669
UBB-2
Polyubiquitin-B.
     
 0.664
Psmd14
26S proteasome non-ATPase regulatory subunit 14.
    
 0.618
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.