STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smek1Serine/threonine-protein phosphatase 4 regulatory subunit 3A. (905 aa)    
Predicted Functional Partners:
ppp4cb
Serine/threonine-protein phosphatase.
   
 0.990
Ppx1
Serine/threonine-protein phosphatase.
   
 0.981
PPP4R2r
Serine/threonine-protein phosphatase 4 regulatory subunit 2.
   
 
 0.959
T02_4653
Uncharacterized protein.
   
 
 0.959
PPP2R4
Serine/threonine-protein phosphatase 2A activator; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
    
 
 0.944
Mob1b
Serine/threonine-protein phosphatase.
   
 0.693
Supt5h
Transcription elongation factor SPT5.
    
 
 0.686
TOPP1
Serine/threonine-protein phosphatase.
   
 0.654
T02_8407
Serine/threonine-protein phosphatase.
   
 0.654
gsp-2
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
   
 0.654
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.