STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alHomeobox protein aristaless. (314 aa)    
Predicted Functional Partners:
LDB2
LIM domain-binding protein 2.
    
 0.737
TCF3
Transcription factor E2-alpha.
    
 0.647
GATA6
Transcription factor-like protein.
    
 0.645
T02_2926
GATA-binding factor 3.
    
 0.645
hlh-4
Helix-loop-helix protein 4.
    
 0.585
ASCL4
Achaete-scute-like protein 4.
    
 0.585
D917_04291
Helix-loop-helix DNA-binding domain protein.
    
 0.585
hand1
Heart-and neural crest derivatives-expressed protein 1.
    
 0.585
ptf1a
Pancreas transcription factor 1 subunit alpha.
    
 0.585
hlh-13
Helix-loop-helix protein 13.
    
 0.585
Your Current Organism:
Trichinella nativa
NCBI taxonomy Id: 6335
Other names: T. nativa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.