STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sec23Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily. (64 aa)    
Predicted Functional Partners:
Sec13
Protein SEC13-like protein; Belongs to the WD repeat SEC13 family.
   
 0.990
SEC24B
Protein transport protein Sec24B.
   
 0.985
SEC24C
Protein transport protein Sec24C.
   
 0.983
ZK180.4
GTP-binding protein SAR1; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.973
SEC16A
Protein transport protein sec16.
   
 0.964
Mrps28
Vesicle-trafficking protein SEC22b; Belongs to the synaptobrevin family.
   
 0.958
GORASP2
Golgi reassembly-stacking protein 2.
   
 0.864
PREB
Prolactin regulatory element-binding protein.
   
 0.859
Stx5
Syntaxin-5; Belongs to the syntaxin family.
    
 0.854
sel-9
Suppressor/enhancer of lin-12 protein 9.
   
 0.843
Your Current Organism:
Trichinella nelsoni
NCBI taxonomy Id: 6336
Other names: T. nelsoni
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