STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DEPDC5DEP domain-containing protein 5. (1286 aa)    
Predicted Functional Partners:
Nprl2
Nitrogen permease regulator 2-like protein.
    
 0.999
T07_12233
WD repeat-containing protein mio-A.
   
 0.999
WDR24
WD repeat-containing protein 24.
    
 0.999
Sec13
Protein SEC13-like protein; Belongs to the WD repeat SEC13 family.
    
 0.997
Rraga
Ras-related GTP-binding protein A.
    
 0.996
T07_804
Uncharacterized protein.
    
 0.991
seh1l
Nucleoporin seh1; Belongs to the WD repeat SEC13 family.
    
 0.989
RRAGD
Ras-related GTP-binding protein D.
   
 0.986
immp1l
Mitochondrial inner membrane protease subunit.
    
 0.970
npp-18
Nucleoporin SEH1.
    
 0.958
Your Current Organism:
Trichinella nelsoni
NCBI taxonomy Id: 6336
Other names: T. nelsoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.