STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Imp4U3 small nucleolar ribonucleoprotein IMP4. (334 aa)    
Predicted Functional Partners:
MPHOSPH10
U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.
   
 0.999
Rrp9
U3 small nucleolar RNA-interacting protein 2.
   
 
 0.998
Wdr43
WD repeat-containing protein 43.
   
  0.998
CIRH1A
Cirhin.
   
  0.998
nol6
Nucleolar protein 6.
   
 0.998
Treh
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
   0.998
Tbl3
Transducin beta-like protein 3.
   
 
 0.998
Utp18
U3 small nucleolar RNA-associated protein 18-like protein.
   
 0.998
PWP2
Periodic tryptophan protein 2-like protein.
   
 
 0.998
RCL1
RNA 3'-terminal phosphate cyclase-like protein.
   
 
 0.997
Your Current Organism:
Trichinella nelsoni
NCBI taxonomy Id: 6336
Other names: T. nelsoni
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