Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CIRH1A | Imp4 | A0A0V0S2R9 | A0A0V0RR46 | Cirhin. | U3 small nucleolar ribonucleoprotein IMP4. | 0.998 |
CIRH1A | MPHOSPH10 | A0A0V0S2R9 | A0A0V0SJE0 | Cirhin. | U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. | 0.999 |
CIRH1A | PWP2 | A0A0V0S2R9 | A0A0V0SN98 | Cirhin. | Periodic tryptophan protein 2-like protein. | 0.999 |
CIRH1A | RCL1 | A0A0V0S2R9 | A0A0V0RPX9 | Cirhin. | RNA 3'-terminal phosphate cyclase-like protein. | 0.998 |
CIRH1A | Rrp9 | A0A0V0S2R9 | A0A0V0RJQ2 | Cirhin. | U3 small nucleolar RNA-interacting protein 2. | 0.999 |
CIRH1A | Tbl3 | A0A0V0S2R9 | A0A0V0SFK2 | Cirhin. | Transducin beta-like protein 3. | 0.999 |
CIRH1A | Treh | A0A0V0S2R9 | A0A0V0SDI2 | Cirhin. | RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. | 0.997 |
CIRH1A | Utp18 | A0A0V0S2R9 | A0A0V0SJZ1 | Cirhin. | U3 small nucleolar RNA-associated protein 18-like protein. | 0.999 |
CIRH1A | Wdr43 | A0A0V0S2R9 | A0A0V0RRI9 | Cirhin. | WD repeat-containing protein 43. | 0.999 |
CIRH1A | nol6 | A0A0V0S2R9 | A0A0V0S4G6 | Cirhin. | Nucleolar protein 6. | 0.999 |
Imp4 | CIRH1A | A0A0V0RR46 | A0A0V0S2R9 | U3 small nucleolar ribonucleoprotein IMP4. | Cirhin. | 0.998 |
Imp4 | MPHOSPH10 | A0A0V0RR46 | A0A0V0SJE0 | U3 small nucleolar ribonucleoprotein IMP4. | U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. | 0.999 |
Imp4 | PWP2 | A0A0V0RR46 | A0A0V0SN98 | U3 small nucleolar ribonucleoprotein IMP4. | Periodic tryptophan protein 2-like protein. | 0.998 |
Imp4 | RCL1 | A0A0V0RR46 | A0A0V0RPX9 | U3 small nucleolar ribonucleoprotein IMP4. | RNA 3'-terminal phosphate cyclase-like protein. | 0.997 |
Imp4 | Rrp9 | A0A0V0RR46 | A0A0V0RJQ2 | U3 small nucleolar ribonucleoprotein IMP4. | U3 small nucleolar RNA-interacting protein 2. | 0.998 |
Imp4 | Tbl3 | A0A0V0RR46 | A0A0V0SFK2 | U3 small nucleolar ribonucleoprotein IMP4. | Transducin beta-like protein 3. | 0.998 |
Imp4 | Treh | A0A0V0RR46 | A0A0V0SDI2 | U3 small nucleolar ribonucleoprotein IMP4. | RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. | 0.998 |
Imp4 | Utp18 | A0A0V0RR46 | A0A0V0SJZ1 | U3 small nucleolar ribonucleoprotein IMP4. | U3 small nucleolar RNA-associated protein 18-like protein. | 0.998 |
Imp4 | Wdr43 | A0A0V0RR46 | A0A0V0RRI9 | U3 small nucleolar ribonucleoprotein IMP4. | WD repeat-containing protein 43. | 0.998 |
Imp4 | nol6 | A0A0V0RR46 | A0A0V0S4G6 | U3 small nucleolar ribonucleoprotein IMP4. | Nucleolar protein 6. | 0.998 |
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