STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mig-6Papilin. (2065 aa)    
Predicted Functional Partners:
pad-2
GDP-fucose protein O-fucosyltransferase 2.
     
 0.637
SPON1-2
Spondin-1.
  
  
0.623
SPON1
Spondin-1.
     
 0.579
Rtfdc1
Semaphorin-2A; Belongs to the semaphorin family.
  
  
 0.558
C38H2.2
Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1.
   
 
 0.540
fng
Fringe glycosyltransferase.
     
 0.521
smp-1
Semaphorin-1A; Belongs to the semaphorin family.
  
  
 0.520
Adamts16
A disintegrin and metalloproteinase with thrombospondin motifs 16.
     
 0.508
ADAMTS16
A disintegrin and metalloproteinase with thrombospondin motifs 16.
     
0.508
ADAMTS17
A disintegrin and metalloproteinase with thrombospondin motifs 17.
     
0.508
Your Current Organism:
Trichinella nelsoni
NCBI taxonomy Id: 6336
Other names: T. nelsoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.