STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zfyve20Rabenosyn-5. (519 aa)    
Predicted Functional Partners:
Vps45
Vacuolar protein sorting-associated protein 45; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.997
T07_12527
Ras-related protein Rab-4B.
    
 0.982
RAB5A
Ras-related protein Rab-5A.
   
 0.974
Ehd1
EH domain-containing protein 1.
    
 0.963
EHD1-2
EH domain-containing protein 1.
    
 0.963
RAB5B
Ras-related protein Rab-5B.
   
 0.959
WDFY3
WD repeat and FYVE domain-containing protein 3.
     
0.923
EHD1
EH domain-containing protein 1; Belongs to the TRAFAC class dynamin-like GTPase superfamily. Dynamin/Fzo/YdjA family.
    
 0.866
SRL
Sarcalumenin.
    
 0.812
T07_415
Vacuolar protein sorting-associated protein 11-like protein.
    
 
 0.686
Your Current Organism:
Trichinella nelsoni
NCBI taxonomy Id: 6336
Other names: T. nelsoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.