STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Brip1Fanconi anemia group J-like protein. (847 aa)    
Predicted Functional Partners:
MLH1
DNA mismatch repair protein Mlh1.
   
 0.958
Topbp1
DNA topoisomerase 2-binding protein 1.
   
 0.955
hay
DNA excision repair protein haywire.
   
 0.910
Gtf2h2
General transcription factor IIH subunit.
    
 0.907
Mnat1
CDK-activating kinase assembly factor MAT1; Belongs to the complex I LYR family.
    
 0.907
GTF2H3
General transcription factor IIH subunit 3.
    
 0.905
Brca2
Breast cancer type 2 susceptibility-like protein.
   
 0.901
BRCA1
Breast cancer type 1 susceptibility-like protein.
   
 0.899
GTF2E1
General transcription factor IIE subunit 1.
    
 0.893
CDK7
Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily.
    
 0.891
Your Current Organism:
Trichinella nelsoni
NCBI taxonomy Id: 6336
Other names: T. nelsoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.