STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DDX5Putative ATP-dependent RNA helicase DDX5; Belongs to the DEAD box helicase family. (547 aa)    
Predicted Functional Partners:
Cdc40
Pre-mRNA-processing factor 17.
   
 0.987
Ppil1
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
 0.987
cwc22
Pre-mRNA-splicing factor CWC22-like protein.
   
 0.987
Pes1
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 0.973
DROSHA
Ribonuclease 3.
   
 0.962
E01A2.2
Serrate RNA effector molecule-like protein.
   
 0.947
Nop60B
H/ACA ribonucleoprotein complex subunit 4.
  
 
 0.943
SKIV2L2
Superkiller viralicidic activity 2-like 2.
   
 0.939
F08C6.2
Regulator of nonsense transcripts 3B.
    
 0.922
nst-1
Guanine nucleotide-binding protein-like 3-like protein.
   
 0.922
Your Current Organism:
Trichinella nelsoni
NCBI taxonomy Id: 6336
Other names: T. nelsoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.