STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC4A10Anion exchange protein. (977 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.726
comt
Vesicle-fusing ATPase 1.
    
  0.635
cdc-48.2
Transitional endoplasmic reticulum ATPase-like protein 2; Belongs to the AAA ATPase family.
    
  0.596
SPATA5
Spermatogenesis-associated protein 5.
    
  0.596
Rho1
Ras-like GTP-binding protein Rho1.
    
 0.585
T07_3206
Putative Rho GTPase-activating protein.
     
 0.561
Actn
Alpha-actinin, sarcomeric.
     
 0.555
NVL
Nuclear valosin-containing protein-like; Belongs to the AAA ATPase family.
    
  0.547
Fignl1
Fidgetin-like protein 1.
    
  0.547
MTR
Methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.536
Your Current Organism:
Trichinella nelsoni
NCBI taxonomy Id: 6336
Other names: T. nelsoni
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