STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TIGD6-7Tigger transposable element-derived protein 6. (134 aa)    
Predicted Functional Partners:
Tigd4-3
Tigger transposable element-derived protein 4.
  
     0.470
ERCC6
DNA excision repair protein ERCC-6.
    
  0.459
ube2ia
SUMO-conjugating enzyme UBC9-A; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.455
ubc-9
SUMO-conjugating enzyme UBC9.
    
  0.455
ube2i
SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family.
    
  0.455
ube2ia-3
SUMO-conjugating enzyme UBC9-A.
    
  0.455
KCTD5
BTB/POZ domain-containing protein KCTD5.
    
  0.436
Tigd4-2
Tigger transposable element-derived protein 4.
  
     0.433
Jrkl
Jerky-like protein-like.
  
     0.420
Jrkl-2
Jerky-like protein-like.
  
     0.403
Your Current Organism:
Trichinella nelsoni
NCBI taxonomy Id: 6336
Other names: T. nelsoni
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.