Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DHX38Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16. (121 aa)    
Predicted Functional Partners:
mog-5
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5.
 
 
  0.966
mog-1
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1.
 
     0.951
CDC40
Pre-mRNA-processing factor 17.
   
 0.912
CWC25
Pre-mRNA-splicing factor CWC25-like protein.
    
 0.908
DHX38-2
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
 
      0.900
mog-1-3
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1.
 
      0.900
Cwc22
Pre-mRNA-splicing factor CWC22-like protein.
   
 0.896
Shf
SH2 domain-containing adapter protein F.
   
 0.871
gpkow
G patch domain and KOW motifs-containing protein.
   
 0.867
HS3ST3A1
Pre-mRNA-splicing factor syf2.
    
 0.866
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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