STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T4E_391Reverse transcriptase domain-containing protein. (452 aa)    
Predicted Functional Partners:
FANCM
Fanconi anemia group M protein.
    
 0.710
T4E_629
Integrase catalytic domain-containing protein.
 
     0.526
T4E_2216
Uncharacterized protein.
 
     0.522
T4E_6338
Integrase_H2C2 domain-containing protein.
 
     0.520
T4E_188
Integrase catalytic domain-containing protein.
 
     0.519
T4E_4168
Uncharacterized protein.
 
     0.517
T4E_11316
Integrase catalytic domain-containing protein.
 
     0.515
T4E_7838
Integrase catalytic domain-containing protein.
 
     0.512
T4E_8043
Uncharacterized protein.
 
     0.507
T4E_2293
DUF5641 domain-containing protein.
 
     0.505
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.