STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CL1-2Cathepsin L; Belongs to the peptidase C1 family. (540 aa)    
Predicted Functional Partners:
Cp1
Cathepsin L; Belongs to the peptidase C1 family.
  
0.706
ctse-a
Cathepsin E-A; Belongs to the peptidase A1 family.
   
 0.659
Ctsd
Cathepsin D; Belongs to the peptidase A1 family.
   
 0.659
T4E_6178
Aspartic proteinase oryzasin-1; Belongs to the peptidase A1 family.
   
 0.659
GRN
Granulin-like protein.
   
 0.593
cpr-6
Cathepsin B-like cysteine proteinase 6; Belongs to the peptidase C1 family.
   
0.560
CTSB
Cathepsin B; Belongs to the peptidase C1 family.
   
0.560
Ctsz
Cathepsin Z; Belongs to the peptidase C1 family.
   
0.560
Tonsl
Tonsoku-like protein.
    
 0.541
Rps14
40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family.
   
 0.524
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.