STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Wdr5bWD repeat-containing protein 5B. (104 aa)    
Predicted Functional Partners:
unc-79
Uncoordinated protein 79.
    
 0.994
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.941
unc-10
Rab-3-interacting molecule unc-10.
    
 0.927
Wdr5-2
WD repeat-containing protein 5.
 
    
0.910
ASH2L
Set1/Ash2 histone methyltransferase complex subunit ASH2.
    
 0.876
setd1b
Histone-lysine N-methyltransferase SETD1B.
   
 0.861
KDM6A
Lysine-specific demethylase 6A.
    
 0.815
Ranbp1
Ran-specific GTPase-activating protein.
    
 0.799
RGPD1
RANBP2-like and GRIP domain-containing protein 1.
    
 0.799
Hcfc1
Host cell factor 1.
   
 0.797
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.