STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NEUROG3Neurogenin-3. (266 aa)    
Predicted Functional Partners:
hes1-b
Transcription factor HES-1-B.
    
 0.846
INSM1
Insulinoma-associated protein 1.
   
 0.733
TCF3
Transcription factor E2-alpha.
    
 
 0.700
PAX6
Paired box protein Pax-6.
   
 
 0.689
nkx2.2a
Homeobox protein Nkx-2.2a.
   
 0.636
ASCL4
Achaete-scute-like protein 4.
  
 
0.582
comt
Trifunctional purine biosynthetic protein adenosine-3.
      
 0.541
cnd-1
Neurogenic differentiation factor 1.
  
  
0.506
hes2
Transcription factor HES-2.
    
 0.488
T4B_12429
Uncharacterized protein.
    
 0.488
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.