STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGBD2-3PiggyBac transposable element-derived protein 2. (555 aa)    
Predicted Functional Partners:
unc-89-2
Muscle M-line assembly protein unc-89.
    
 0.820
unc-89-3
Muscle M-line assembly protein unc-89.
    
 0.820
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.757
KDM6A
Lysine-specific demethylase 6A.
    
 0.600
Mrps11
28S ribosomal protein S11, mitochondrial.
    
  0.539
mrps-5
Putative 28S ribosomal protein S5, mitochondrial.
    
  0.538
Mrps2
28S ribosomal protein S2, mitochondrial.
   
  0.538
RPS23
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
    
 0.537
Mrps28
28S ribosomal protein S28, mitochondrial.
    
  0.534
mRpS6
Putative 28S ribosomal protein S6, mitochondrial.
    
  0.534
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.