STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Zic5Zinc finger protein ZIC 5. (493 aa)    
Predicted Functional Partners:
unc-89-2
Muscle M-line assembly protein unc-89.
    
 0.820
unc-89-3
Muscle M-line assembly protein unc-89.
    
 0.820
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.757
KDM6A
Lysine-specific demethylase 6A.
    
 0.600
GTF3C3
General transcription factor 3C polypeptide 3.
    
 0.579
STARD5
Protein maternal effect lethal 26.
   
 0.577
rdx
Protein roadkill.
   
 0.577
dom
Helicase domino.
   
 0.558
POLR3C
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.551
RUVBL1
DNA helicase; Belongs to the RuvB family.
    
 0.543
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.