STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T4E_10338U1 small nuclear ribonucleoprotein C. (111 aa)    
Predicted Functional Partners:
Snrpa1
U2 small nuclear ribonucleoprotein A.
   
 
 0.999
snr-7
Small nuclear ribonucleoprotein G.
   
 0.999
snr-4
Small nuclear ribonucleoprotein Sm D2.
   
 0.998
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.997
T4A_13206
Uncharacterized protein.
   
 0.996
Snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.995
sf3b1
Splicing factor 3B subunit 1.
   
 0.994
sap-49
Splicing factor 3B subunit 4.
   
 0.991
DDX23
Putative ATP-dependent RNA helicase DDX23.
    
 0.990
SF3B2
Splicing factor 3B subunit 2.
   
 0.989
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.