STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SetProtein SET; Belongs to the nucleosome assembly protein (NAP) family. (326 aa)    
Predicted Functional Partners:
HTZ1
Histone H2A; Belongs to the histone H2A family.
   
 
 0.867
asf1
Histone chaperone asf1.
   
 
 0.858
Xpo1
Exportin-1.
    
  0.722
Nup214
Nuclear pore complex protein.
     
 0.692
T4E_522
Histone H3.
   
 
 0.669
Brca1
Breast cancer type 1 susceptibility-like protein.
     
 0.669
T4A_10341
Histone H3; Belongs to the histone H3 family.
   
 
 0.669
HHT3
Histone H3; Belongs to the histone H3 family.
   
 
 0.669
CENPA
Histone H3-like centromeric protein A.
   
 
 0.668
elavl3
ELAV-like protein 3.
   
  0.663
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.