STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Atp13a1Putative cation-transporting ATPase C10C6.6. (692 aa)    
Predicted Functional Partners:
Tmem30b
Cell cycle control protein 50B.
    
 0.735
ATP1B1
Sodium/potassium-transporting ATPase subunit beta-1.
    
 0.693
nkb-3
Putative sodium/potassium-transporting ATPase subunit beta-3.
    
 0.693
ATP7B
Copper-transporting ATPase 1.
   
 0.645
ATP9B
Phospholipid-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IV subfamily.
    
 0.608
Gak
Cyclin-G-associated kinase.
   
 
 0.607
AK5
Adenylate kinase isoenzyme 5.
  
 
 0.556
F38B2.4
Adenylate kinase isoenzyme 1; Belongs to the adenylate kinase family.
  
 
 0.556
C29F7.3
UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.
  
 
 0.556
ATP2C1
Calcium-transporting ATPase; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium.
  
 
0.538
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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