STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snr-4Small nuclear ribonucleoprotein Sm D2. (127 aa)    
Predicted Functional Partners:
lsm-4
U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.
   
 0.999
SART1
U4/U6.U5 tri-snRNP-associated protein 1.
    
 0.999
Snrpa1
U2 small nuclear ribonucleoprotein A.
   
 0.999
Snrpd1
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.999
CRNKL1
Crooked neck-like protein 1.
    
 
 0.999
Lsm2
U6 snRNA-associated Sm-like protein LSm2.
   
 0.999
Prpf8
Pre-mRNA-processing-splicing factor 8.
   
 0.999
PRPF19
Pre-mRNA-processing factor 19.
   
 
 0.999
SF3B2
Splicing factor 3B subunit 2.
    
 0.999
Lsm6
U6 snRNA-associated Sm-like protein LSm6; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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