STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZNHIT6Box C/D snoRNA protein 1. (1157 aa)    
Predicted Functional Partners:
mrps-5
Putative 28S ribosomal protein S5, mitochondrial.
    
 
 0.794
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.711
T4E_8746
Uncharacterized protein.
   
 
 0.703
MRPL21
39S ribosomal protein L21, mitochondrial.
   
 
 0.689
RPL3
60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.
    
 
 0.685
PCNA
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.678
Eif1a
39S ribosomal protein L4, mitochondrial.
    
 
 0.673
rpl-26
60S ribosomal protein L26.
    
 
 0.670
RPS18
40S ribosomal protein S18.
    
 
 0.654
Mrpl13
39S ribosomal protein L13, mitochondrial.
   
 
 0.650
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.