STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rccd1RCC1 domain-containing protein 1. (388 aa)    
Predicted Functional Partners:
T4A_4727
GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.
    
 0.831
Ranbp1
Ran-specific GTPase-activating protein.
   
 0.816
RGPD1
RANBP2-like and GRIP domain-containing protein 1.
   
 0.816
KPNA3
Importin subunit alpha-4.
   
 
 0.687
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
   
 0.667
T4E_3676
Uncharacterized protein.
    
 
 0.584
ND4
NADH-ubiquinone oxidoreductase chain 4.
    
 
 0.584
NUDC
Nuclear migration protein nudC.
    
  0.579
Cul3
Cullin-3; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
    
 0.571
Cul1
Cullin-1; Belongs to the cullin family.
    
 0.571
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.