STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T4E_7641Uncharacterized protein. (669 aa)    
Predicted Functional Partners:
Trio
Triple functional domain protein.
    
 0.649
EGF1
Fibropellin-1.
    
 0.641
sod1
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
    
 0.633
unc-89-2
Muscle M-line assembly protein unc-89.
     
 0.611
unc-89-3
Muscle M-line assembly protein unc-89.
     
 0.611
TLN1
Talin-1.
     
 0.606
T4A_10538
Uncharacterized protein.
   
 0.596
T4E_1692
Vinculin.
     
 0.589
flr
Actin-interacting protein 1.
   
 
 0.583
Cd9
Tetraspanin.
   
 
 0.577
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.