blp protein (Trichinella pseudospiralis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

blp

Mitochondrial import inner membrane translocase subunit Tim16. (136 aa)

Predicted Functional Partners:

TIMM44

0.988

timm23

0.982

TIMM17B

0.977

ttm50

0.928

GRPEL1

0.856

HSPA9

0.761

Pikfyve

0.756

PMPCA

0.698

tin-10

0.653

Ubash3b

0.630

Your Current Organism:

Trichinella pseudospiralis

NCBI taxonomy Id: 6337
Other names: T. pseudospiralis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GRPEL1	HSPA9	A0A0V1F082	A0A0V0Y5Z5	GrpE-like protein 1, mitochondrial; Belongs to the GrpE family.	Stress-70 protein, mitochondrial; Belongs to the heat shock protein 70 family.	0.996
GRPEL1	PMPCA	A0A0V1F082	A0A0V0XUE3	GrpE-like protein 1, mitochondrial; Belongs to the GrpE family.	Mitochondrial-processing peptidase subunit alpha.	0.539
GRPEL1	Pikfyve	A0A0V1F082	A0A0V0XM24	GrpE-like protein 1, mitochondrial; Belongs to the GrpE family.	1-phosphatidylinositol 3-phosphate 5-kinase.	0.714
GRPEL1	TIMM17B	A0A0V1F082	A0A0V0Y4L2	GrpE-like protein 1, mitochondrial; Belongs to the GrpE family.	Mitochondrial import inner membrane translocase subunit Tim17-B.	0.769
GRPEL1	TIMM44	A0A0V1F082	A0A0V0XLT3	GrpE-like protein 1, mitochondrial; Belongs to the GrpE family.	Mitochondrial import inner membrane translocase subunit TIM44.	0.984
GRPEL1	Ubash3b	A0A0V1F082	A0A0V0XYS0	GrpE-like protein 1, mitochondrial; Belongs to the GrpE family.	Cactin.	0.550
GRPEL1	blp	A0A0V1F082	A0A0V0YIE0	GrpE-like protein 1, mitochondrial; Belongs to the GrpE family.	Mitochondrial import inner membrane translocase subunit Tim16.	0.856
GRPEL1	timm23	A0A0V1F082	A0A0V1IVX4	GrpE-like protein 1, mitochondrial; Belongs to the GrpE family.	Mitochondrial import inner membrane translocase subunit Tim23.	0.779
GRPEL1	tin-10	A0A0V1F082	A0A0V1I7W6	GrpE-like protein 1, mitochondrial; Belongs to the GrpE family.	Mitochondrial import inner membrane translocase subunit Tim10.	0.649
GRPEL1	ttm50	A0A0V1F082	A0A0V1IG61	GrpE-like protein 1, mitochondrial; Belongs to the GrpE family.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.753
HSPA9	GRPEL1	A0A0V0Y5Z5	A0A0V1F082	Stress-70 protein, mitochondrial; Belongs to the heat shock protein 70 family.	GrpE-like protein 1, mitochondrial; Belongs to the GrpE family.	0.996
HSPA9	PMPCA	A0A0V0Y5Z5	A0A0V0XUE3	Stress-70 protein, mitochondrial; Belongs to the heat shock protein 70 family.	Mitochondrial-processing peptidase subunit alpha.	0.455
HSPA9	TIMM17B	A0A0V0Y5Z5	A0A0V0Y4L2	Stress-70 protein, mitochondrial; Belongs to the heat shock protein 70 family.	Mitochondrial import inner membrane translocase subunit Tim17-B.	0.963
HSPA9	TIMM44	A0A0V0Y5Z5	A0A0V0XLT3	Stress-70 protein, mitochondrial; Belongs to the heat shock protein 70 family.	Mitochondrial import inner membrane translocase subunit TIM44.	0.991
HSPA9	blp	A0A0V0Y5Z5	A0A0V0YIE0	Stress-70 protein, mitochondrial; Belongs to the heat shock protein 70 family.	Mitochondrial import inner membrane translocase subunit Tim16.	0.761
HSPA9	timm23	A0A0V0Y5Z5	A0A0V1IVX4	Stress-70 protein, mitochondrial; Belongs to the heat shock protein 70 family.	Mitochondrial import inner membrane translocase subunit Tim23.	0.965
HSPA9	tin-10	A0A0V0Y5Z5	A0A0V1I7W6	Stress-70 protein, mitochondrial; Belongs to the heat shock protein 70 family.	Mitochondrial import inner membrane translocase subunit Tim10.	0.416
HSPA9	ttm50	A0A0V0Y5Z5	A0A0V1IG61	Stress-70 protein, mitochondrial; Belongs to the heat shock protein 70 family.	Mitochondrial import inner membrane translocase subunit TIM50; Essential component of the TIM23 complex, a complex that mediates the translocation of transit peptide-containing proteins across the mitochondrial inner membrane.	0.742
PMPCA	GRPEL1	A0A0V0XUE3	A0A0V1F082	Mitochondrial-processing peptidase subunit alpha.	GrpE-like protein 1, mitochondrial; Belongs to the GrpE family.	0.539
PMPCA	HSPA9	A0A0V0XUE3	A0A0V0Y5Z5	Mitochondrial-processing peptidase subunit alpha.	Stress-70 protein, mitochondrial; Belongs to the heat shock protein 70 family.	0.455