STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ZCCHC9Zinc finger CCHC domain-containing protein 9. (245 aa)    
Predicted Functional Partners:
Skiv2l2
Superkiller viralicidic activity 2-like 2.
   
 
 0.920
SKIV2L
Helicase SKI2W.
   
 
 0.737
T4A_8083
HABP4_PAI-RBP1 domain-containing protein.
   
 
 0.671
Tra2b
Transformer-2-like protein beta.
   
 
 0.628
IPO7
Importin-7.
   
 
 0.628
Rexo4
RNA exonuclease 4.
   
   0.624
Rexo4-2
RNA exonuclease 4.
   
   0.624
Exosc10
Exosome component 10.
   
 
 0.606
DENR
Density-regulated protein; Belongs to the DENR family.
   
 
 0.594
NOP12
RNA-binding protein 34.
   
 
 0.587
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.