STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PGRMC1Membrane-associated progesterone receptor component 1; Belongs to the cytochrome b5 family. (176 aa)    
Predicted Functional Partners:
Ankfy1
Ankyrin repeat and FYVE domain-containing protein 1.
    
 0.615
Fa2h
Fatty acid 2-hydroxylase; Belongs to the sterol desaturase family.
   
  
 0.588
VAPB
Major sperm protein; Central component in molecular interactions underlying sperm crawling. Forms an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod.
   
  0.523
Stx5
Syntaxin-5; Belongs to the syntaxin family.
    
  0.521
Cyt-b5
Cytochrome b5.
   
  
 0.519
Cyb5r4
Cytochrome b5 reductase 4.
   
  
 0.516
RAC2
Ras-related C3 botulinum toxin substrate 2.
    
 0.514
Rac1
Ras-related C3 botulinum toxin substrate 1.
    
 0.514
F52C9.5-4
Uncharacterized protein.
    
 0.514
Rhou
Rho-related GTP-binding protein RhoU.
    
 0.514
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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