STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RpL3860S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (73 aa)    
Predicted Functional Partners:
rps8
40S ribosomal protein S8.
   
 
 0.999
Rps3a
40S ribosomal protein S3a.
   
 
 0.999
RPL6
60S ribosomal protein L6.
   
 0.999
RpL13A
60S ribosomal protein L13a.
   
 0.999
RpL29
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
 0.999
MRPL1
39S ribosomal protein L1, mitochondrial.
   
 0.999
T4E_5363
Uncharacterized protein.
   
 0.999
RPL14
60S ribosomal protein L14.
   
 0.999
Gnb2l1
Guanine nucleotide-binding protein subunit beta-2-like 1.
   
 
 0.999
eIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
    
 
 0.999
Your Current Organism:
Trichinella pseudospiralis
NCBI taxonomy Id: 6337
Other names: T. pseudospiralis
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