AQP53442.1 protein (Vagococcus penaei) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

AQP53442.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (191 aa)

Predicted Functional Partners:

AQP53424.1

0.794

AQP53423.1

0.783

AQP53425.1

0.758

AQP53470.1

0.637

BW732_10565

0.592

AQP53443.1

0.583

AQP53155.1

0.468

AQP53612.1

0.466

AQP53665.1

0.444

AQP52995.1

0.437

Your Current Organism:

Vagococcus penaei

NCBI taxonomy Id: 633807
Other names: CIP 109914, LMG 24833, LMG:24833, V. penaei, Vagococcus penaei Jaffres et al. 2010, Vagococcus sp. CD276, strain CD 276, strain CD276

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQP52995.1	AQP53442.1	BW732_01315	BW732_03775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.437
AQP53155.1	AQP53442.1	BW732_02180	BW732_03775	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
AQP53155.1	AQP53443.1	BW732_02180	BW732_03780	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
AQP53423.1	AQP53424.1	BW732_03670	BW732_03675	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
AQP53423.1	AQP53425.1	BW732_03670	BW732_03680	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQP53423.1	AQP53442.1	BW732_03670	BW732_03775	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
AQP53423.1	AQP53443.1	BW732_03670	BW732_03780	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.770
AQP53423.1	AQP53470.1	BW732_03670	BW732_03920	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.590
AQP53423.1	AQP53612.1	BW732_03670	BW732_04770	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.663
AQP53424.1	AQP53423.1	BW732_03675	BW732_03670	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.790
AQP53424.1	AQP53425.1	BW732_03675	BW732_03680	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
AQP53424.1	AQP53442.1	BW732_03675	BW732_03775	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.794
AQP53424.1	AQP53443.1	BW732_03675	BW732_03780	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.769
AQP53424.1	AQP53470.1	BW732_03675	BW732_03920	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.637
AQP53424.1	AQP53612.1	BW732_03675	BW732_04770	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.695
AQP53425.1	AQP53423.1	BW732_03680	BW732_03670	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.718
AQP53425.1	AQP53424.1	BW732_03680	BW732_03675	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.756
AQP53425.1	AQP53442.1	BW732_03680	BW732_03775	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.758
AQP53425.1	AQP53443.1	BW732_03680	BW732_03780	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
AQP53425.1	AQP53470.1	BW732_03680	BW732_03920	Cell surface protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.570

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Network Stats

number of nodes:

11

number of edges:

35

average node degree:

6.36

avg. local clustering coefficient:

0.716

expected number of edges:

10

PPI enrichment p-value:

7.08e-10

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006631

Fatty acid metabolic process

3 of 14

1.73

1.19

0.0035

GO:0006412

Translation

6 of 91

1.21

1.08

0.00066

GO:0019538

Protein metabolic process

7 of 249

0.84

0.67

0.0019

GO:0044249

Cellular biosynthetic process

8 of 458

0.64

0.46

0.0060

GO:1901576

Organic substance biosynthetic process

8 of 477

0.62

0.44

0.0075

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

6 of 49

1.48

1.8

1.11e-05

GO:0019843

rRNA binding

5 of 39

1.5

1.63

6.39e-05

GO:0000036

Acyl carrier activity

2 of 2

2.39

1.11

0.0092

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

6 of 52

1.46

1.86

4.25e-06

GO:0015934

Large ribosomal subunit

2 of 6

1.92

1.04

0.0098

GO:0005622

Intracellular anatomical structure

9 of 907

0.39

0.28

0.0269

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:186

rRNA-binding

6 of 15

2.0

3.4

2.30e-08

CL:187

Mixed, incl. Large ribosomal subunit, and tRNA-binding

5 of 9

2.14

3.3

1.30e-07

CL:153

Peptide metabolic process, and Proton channel activity

7 of 149

1.07

1.12

2.31e-05

CL:1783

Mixed, incl. Steroid biosynthesis, and ANL, N-terminal domain

2 of 7

1.85

0.97

0.0130

CL:1684

Mixed, incl. Oxidative phosphorylation, and Terpenoid metabolic process

4 of 62

1.2

0.95

0.0025

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

6 of 49

1.48

1.95

2.36e-06

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

5 of 34

1.56

1.74

4.64e-05

GOCC:0015934

Large ribosomal subunit

3 of 6

2.09

1.71

0.00047

GOCC:0022625

Cytosolic large ribosomal subunit

2 of 3

2.22

1.31

0.0035

GOCC:0043232

Intracellular non-membrane-bounded organelle

6 of 131

1.06

0.95

0.00047

GOCC:0043229

Intracellular organelle

7 of 274

0.8

0.66

0.0010

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

6 of 51

1.47

1.85

5.24e-06

KW-0687

Ribonucleoprotein

6 of 51

1.47

1.85

5.24e-06

KW-0699

rRNA-binding

5 of 38

1.51

1.77

2.14e-05

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