Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK02461.1 | SHK03993.1 | SAMN04488087_0015 | SAMN04488087_0067 | Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.408 |
SHK03966.1 | SHK03993.1 | SAMN04488087_0066 | SAMN04488087_0067 | Coproporphyrinogen oxidase. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.507 |
SHK03966.1 | SHK04025.1 | SAMN04488087_0066 | SAMN04488087_0068 | Coproporphyrinogen oxidase. | Myo-inositol-1-phosphate synthase. | 0.447 |
SHK03966.1 | SHK04046.1 | SAMN04488087_0066 | SAMN04488087_0069 | Coproporphyrinogen oxidase. | 1L-myo-inositol 1-phosphate cytidylyltransferase. | 0.457 |
SHK03993.1 | SHK02461.1 | SAMN04488087_0067 | SAMN04488087_0015 | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Dinuclear metal center protein, YbgI/SA1388 family; Belongs to the GTP cyclohydrolase I type 2/NIF3 family. | 0.408 |
SHK03993.1 | SHK03966.1 | SAMN04488087_0067 | SAMN04488087_0066 | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Coproporphyrinogen oxidase. | 0.507 |
SHK03993.1 | SHK04025.1 | SAMN04488087_0067 | SAMN04488087_0068 | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Myo-inositol-1-phosphate synthase. | 0.770 |
SHK03993.1 | SHK04046.1 | SAMN04488087_0067 | SAMN04488087_0069 | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 1L-myo-inositol 1-phosphate cytidylyltransferase. | 0.742 |
SHK03993.1 | SHK14187.1 | SAMN04488087_0067 | SAMN04488087_0430 | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Fucose permease. | 0.510 |
SHK03993.1 | SHK94693.1 | SAMN04488087_0067 | SAMN04488087_2348 | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | 0.554 |
SHK03993.1 | psd | SAMN04488087_0067 | SAMN04488087_0268 | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | 0.611 |
SHK04025.1 | SHK03966.1 | SAMN04488087_0068 | SAMN04488087_0066 | Myo-inositol-1-phosphate synthase. | Coproporphyrinogen oxidase. | 0.447 |
SHK04025.1 | SHK03993.1 | SAMN04488087_0068 | SAMN04488087_0067 | Myo-inositol-1-phosphate synthase. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.770 |
SHK04025.1 | SHK04046.1 | SAMN04488087_0068 | SAMN04488087_0069 | Myo-inositol-1-phosphate synthase. | 1L-myo-inositol 1-phosphate cytidylyltransferase. | 0.888 |
SHK04046.1 | SHK03966.1 | SAMN04488087_0069 | SAMN04488087_0066 | 1L-myo-inositol 1-phosphate cytidylyltransferase. | Coproporphyrinogen oxidase. | 0.457 |
SHK04046.1 | SHK03993.1 | SAMN04488087_0069 | SAMN04488087_0067 | 1L-myo-inositol 1-phosphate cytidylyltransferase. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.742 |
SHK04046.1 | SHK04025.1 | SAMN04488087_0069 | SAMN04488087_0068 | 1L-myo-inositol 1-phosphate cytidylyltransferase. | Myo-inositol-1-phosphate synthase. | 0.888 |
SHK14187.1 | SHK03993.1 | SAMN04488087_0430 | SAMN04488087_0067 | Fucose permease. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.510 |
SHK14187.1 | psd | SAMN04488087_0430 | SAMN04488087_0268 | Fucose permease. | Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer). | 0.495 |
SHK94693.1 | SHK03993.1 | SAMN04488087_2348 | SAMN04488087_0067 | Phosphatidate cytidylyltransferase; Belongs to the CDS family. | Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.554 |
page 1 of 2