STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK05235.1Histone H1-like protein Hc1. (58 aa)    
Predicted Functional Partners:
SHK71346.1
Hypothetical protein.
  
     0.762
SHK97624.1
GWxTD domain-containing protein.
  
     0.749
SHK73162.1
YtxH-like protein.
  
     0.747
SHK10765.1
Double zinc ribbon.
  
     0.743
SHK43449.1
Putative DNA-binding domain-containing protein.
  
     0.735
SHK86287.1
Hypothetical protein.
  
     0.701
SHK58999.1
Hypothetical protein.
  
     0.660
SHK05269.1
Protein of unknown function.
 
     0.653
SHK49928.1
Hypothetical protein.
  
     0.650
SHK88250.1
Hypothetical protein.
  
     0.635
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.