Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK07671.1 | SHK07703.1 | SAMN04488087_0195 | SAMN04488087_0196 | Tetratricopeptide repeat-containing protein. | Hypothetical protein. | 0.951 |
SHK07671.1 | SHK07737.1 | SAMN04488087_0195 | SAMN04488087_0197 | Tetratricopeptide repeat-containing protein. | Acyl-CoA hydrolase. | 0.700 |
SHK07671.1 | SHK07769.1 | SAMN04488087_0195 | SAMN04488087_0198 | Tetratricopeptide repeat-containing protein. | Hypothetical protein. | 0.752 |
SHK07671.1 | SHK07801.1 | SAMN04488087_0195 | SAMN04488087_0199 | Tetratricopeptide repeat-containing protein. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.483 |
SHK07703.1 | SHK07671.1 | SAMN04488087_0196 | SAMN04488087_0195 | Hypothetical protein. | Tetratricopeptide repeat-containing protein. | 0.951 |
SHK07703.1 | SHK07737.1 | SAMN04488087_0196 | SAMN04488087_0197 | Hypothetical protein. | Acyl-CoA hydrolase. | 0.642 |
SHK07703.1 | SHK07769.1 | SAMN04488087_0196 | SAMN04488087_0198 | Hypothetical protein. | Hypothetical protein. | 0.633 |
SHK07703.1 | SHK07801.1 | SAMN04488087_0196 | SAMN04488087_0199 | Hypothetical protein. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.476 |
SHK07737.1 | SHK07671.1 | SAMN04488087_0197 | SAMN04488087_0195 | Acyl-CoA hydrolase. | Tetratricopeptide repeat-containing protein. | 0.700 |
SHK07737.1 | SHK07703.1 | SAMN04488087_0197 | SAMN04488087_0196 | Acyl-CoA hydrolase. | Hypothetical protein. | 0.642 |
SHK07737.1 | SHK07769.1 | SAMN04488087_0197 | SAMN04488087_0198 | Acyl-CoA hydrolase. | Hypothetical protein. | 0.762 |
SHK07737.1 | SHK07801.1 | SAMN04488087_0197 | SAMN04488087_0199 | Acyl-CoA hydrolase. | dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose. | 0.615 |
SHK07737.1 | SHK37334.1 | SAMN04488087_0197 | SAMN04488087_1003 | Acyl-CoA hydrolase. | L-threonine 3-dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-threonine to 2- amino-3-ketobutyrate; Belongs to the zinc-containing alcohol dehydrogenase family. | 0.512 |
SHK07737.1 | SHK56858.1 | SAMN04488087_0197 | SAMN04488087_1414 | Acyl-CoA hydrolase. | Uncharacterized domain 1-containing protein. | 0.522 |
SHK07737.1 | SHK60030.1 | SAMN04488087_0197 | SAMN04488087_1522 | Acyl-CoA hydrolase. | acyl-CoA thioester hydrolase. | 0.612 |
SHK07737.1 | SHK78646.1 | SAMN04488087_0197 | SAMN04488087_1970 | Acyl-CoA hydrolase. | 3-hydroxyacyl-CoA dehydrogenase. | 0.802 |
SHK07737.1 | SHK97841.1 | SAMN04488087_0197 | SAMN04488087_2452 | Acyl-CoA hydrolase. | 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase. | 0.771 |
SHK07737.1 | sucC | SAMN04488087_0197 | SAMN04488087_1957 | Acyl-CoA hydrolase. | succinyl-CoA synthetase beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.491 |
SHK07769.1 | SHK07671.1 | SAMN04488087_0198 | SAMN04488087_0195 | Hypothetical protein. | Tetratricopeptide repeat-containing protein. | 0.752 |
SHK07769.1 | SHK07703.1 | SAMN04488087_0198 | SAMN04488087_0196 | Hypothetical protein. | Hypothetical protein. | 0.633 |
page 1 of 3