STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK10342.1Cu-processing system permease protein. (280 aa)    
Predicted Functional Partners:
SHK10286.1
Nitrous oxidase accessory protein.
 
 0.999
SHK10322.1
ABC-2 type transport system ATP-binding protein.
 
 0.997
SHK10254.1
Hypothetical protein.
 
 
 0.985
SHK10377.1
Copper chaperone NosL.
 
 
 0.985
SHK10244.1
Nitrous oxide reductase apoprotein.
 
 
 0.971
SHK10213.1
Cytochrome c.
 
     0.826
SHK91316.1
Protein involved in gliding motility GldA.
  
 0.775
SHK14983.1
ABC-2 type transport system ATP-binding protein.
  
 0.760
SHK50552.1
ABC-2 type transport system ATP-binding protein.
  
 0.760
SHK57006.1
ABC-2 type transport system ATP-binding protein.
  
 0.760
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.