Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHK13161.1 | SHK13214.1 | SAMN04488087_0393 | SAMN04488087_0395 | Protein TonB. | Hypothetical protein. | 0.648 |
SHK13161.1 | SHK13241.1 | SAMN04488087_0393 | SAMN04488087_0396 | Protein TonB. | SAM-dependent methyltransferase. | 0.455 |
SHK13161.1 | mtnA | SAMN04488087_0393 | SAMN04488087_0394 | Protein TonB. | Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). | 0.775 |
SHK13214.1 | SHK13161.1 | SAMN04488087_0395 | SAMN04488087_0393 | Hypothetical protein. | Protein TonB. | 0.648 |
SHK13214.1 | SHK13241.1 | SAMN04488087_0395 | SAMN04488087_0396 | Hypothetical protein. | SAM-dependent methyltransferase. | 0.532 |
SHK13214.1 | mtnA | SAMN04488087_0395 | SAMN04488087_0394 | Hypothetical protein. | Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). | 0.648 |
SHK13241.1 | SHK13161.1 | SAMN04488087_0396 | SAMN04488087_0393 | SAM-dependent methyltransferase. | Protein TonB. | 0.455 |
SHK13241.1 | SHK13214.1 | SAMN04488087_0396 | SAMN04488087_0395 | SAM-dependent methyltransferase. | Hypothetical protein. | 0.532 |
SHK13241.1 | SHK69253.1 | SAMN04488087_0396 | SAMN04488087_1731 | SAM-dependent methyltransferase. | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | 0.409 |
SHK13241.1 | SHK71783.1 | SAMN04488087_0396 | SAMN04488087_1828 | SAM-dependent methyltransferase. | Ribosome biogenesis protein, NOL1/NOP2/fmu family. | 0.432 |
SHK13241.1 | dut | SAMN04488087_0396 | SAMN04488087_1836 | SAM-dependent methyltransferase. | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | 0.458 |
SHK13241.1 | gcvT | SAMN04488087_0396 | SAMN04488087_2396 | SAM-dependent methyltransferase. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.489 |
SHK13241.1 | glyA | SAMN04488087_0396 | SAMN04488087_1603 | SAM-dependent methyltransferase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.422 |
SHK13241.1 | mtnA | SAMN04488087_0396 | SAMN04488087_0394 | SAM-dependent methyltransferase. | Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). | 0.488 |
SHK69253.1 | SHK13241.1 | SAMN04488087_1731 | SAMN04488087_0396 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | SAM-dependent methyltransferase. | 0.409 |
SHK69253.1 | glyA | SAMN04488087_1731 | SAMN04488087_1603 | Dihydrofolate synthase / folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.714 |
SHK71783.1 | SHK13241.1 | SAMN04488087_1828 | SAMN04488087_0396 | Ribosome biogenesis protein, NOL1/NOP2/fmu family. | SAM-dependent methyltransferase. | 0.432 |
dut | SHK13241.1 | SAMN04488087_1836 | SAMN04488087_0396 | Deoxyuridine 5'-triphosphate nucleotidohydrolase; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA; Belongs to the dUTPase family. | SAM-dependent methyltransferase. | 0.458 |
gcvT | SHK13241.1 | SAMN04488087_2396 | SAMN04488087_0396 | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | SAM-dependent methyltransferase. | 0.489 |
gcvT | glyA | SAMN04488087_2396 | SAMN04488087_1603 | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.996 |
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