STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK20016.1WD40-like Beta Propeller Repeat. (379 aa)    
Predicted Functional Partners:
SHK19992.1
Hypothetical protein.
       0.773
SHK79453.1
Peptidase family M28.
 
     0.679
SHK20044.1
Thioredoxin.
       0.551
SHK09518.1
Outer membrane protein OmpA.
  
  0.503
SHK86136.1
OmpA family protein.
  
  0.503
SHK06582.1
Hypothetical protein.
   
  0.499
SHK37568.1
Outer membrane protein OmpA.
   
  0.499
SHK97185.1
Sortilin, neurotensin receptor 3.
  
     0.491
SHK43313.1
Sortilin, neurotensin receptor 3.
  
     0.450
SHK49466.1
Sortilin, neurotensin receptor 3.
  
     0.433
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.