STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK21590.1phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein. (245 aa)    
Predicted Functional Partners:
SHK38471.1
phospholipid/cholesterol/gamma-HCH transport system permease protein; Belongs to the MlaE permease family.
 0.995
SHK80906.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.993
SHK21542.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.991
SHK80956.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 
 0.973
SHK80932.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
  
  
 
0.877
SHK15843.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
  0.851
SHK42582.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
  0.851
SHK79791.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
   
  0.851
SHK57006.1
ABC-2 type transport system ATP-binding protein.
  
 
0.813
SHK31487.1
Phospholipid transport system substrate-binding protein.
  
 
 0.786
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.