STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK30542.1Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family. (312 aa)    
Predicted Functional Partners:
SHK10580.1
L-selenocysteine selenide-lyase (L-alanine-forming); Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
    
   0.795
SHK87204.1
Selenocysteine lyase/Cysteine desulfurase.
    
   0.795
SHL02181.1
Porphobilinogen synthase; Belongs to the ALAD family.
 
      0.584
SHK91503.1
Starch-binding associating with outer membrane.
  
     0.524
SHK91911.1
Tat (twin-arginine translocation) pathway signal sequence.
  
     0.513
SHK28508.1
Starch-binding associating with outer membrane.
  
     0.507
SHK91881.1
Protein of unknown function.
  
     0.446
SHK94604.1
Protein of unknown function.
  
     0.441
SHL03232.1
Alpha-glucosidase.
  
  
  0.435
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.