STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK36110.1Hypothetical protein. (319 aa)    
Predicted Functional Partners:
SHK36153.1
Protein of unknown function DUF58.
 
    0.908
SHK35780.1
Oxygen tolerance.
 
   
 0.784
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
       0.776
SHK35818.1
Tetratricopeptide repeat-containing protein.
 
     0.740
SHK35853.1
Ca-activated chloride channel family protein.
 
     0.662
SHK35891.1
Ca-activated chloride channel family protein.
 
   
 0.630
SHK16265.1
Hypothetical protein.
  
     0.597
SHK78039.1
Tetratricopeptide repeat-containing protein.
  
     0.569
SHK87495.1
Outer membrane receptor proteins, mostly Fe transport.
  
     0.566
SHK16960.1
TonB dependent receptor.
  
     0.553
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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