STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK42582.1Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family. (123 aa)    
Predicted Functional Partners:
SHK45312.1
Serine/threonine-protein kinase RsbW.
 
 0.969
SHK79827.1
Serine/threonine-protein kinase RsbW.
 
 0.967
SHK57111.1
Signal transduction histidine kinase.
  
 
 0.959
SHK34960.1
sigma-B regulation protein RsbU (phosphoserine phosphatase).
 
 0.950
SHK79762.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 0.930
SHK55067.1
Stage II sporulation protein E (SpoIIE).
 
 0.929
SHK15872.1
Serine/threonine-protein kinase RsbW.
  
 0.888
SHK21590.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
   
  0.851
SHK80932.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
   
  0.851
SHK21542.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
  
  0.848
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.