STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK43668.1D-alanyl-D-alanine dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide. (773 aa)    
Predicted Functional Partners:
SHK92237.1
Beta-glucosidase.
 
 
0.820
SHK46601.1
Chitinase; Belongs to the glycosyl hydrolase 18 family.
     
 0.774
SHK28477.1
Hexosaminidase.
    
  0.705
SHK71721.1
Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family.
 
 
 0.697
SHL05998.1
Por secretion system C-terminal sorting domain-containing protein.
    
  0.697
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
     
 0.647
SHK17588.1
Uncharacterized conserved protein YbbC, DUF1343 family.
    0.506
SHK62213.1
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     
 0.488
ddl
D-alanine-D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
     
 0.488
SHK43634.1
Dimerisation domain-containing protein.
       0.453
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.