STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK49785.1Surface antigen variable number repeat-containing protein. (510 aa)    
Predicted Functional Partners:
SHK49814.1
16S rRNA (uracil1498-N3)-methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.775
SHK14347.1
Cell surface protein SprA.
  
     0.750
SHK13214.1
Hypothetical protein.
  
     0.741
SHK58554.1
Por secretion system C-terminal sorting domain-containing protein.
  
   0.701
SHK54613.1
Beta-barrel assembly machine subunit BamD.
  
   0.664
SHK49843.1
Uncharacterized conserved protein YbjQ, UPF0145 family; Belongs to the UPF0145 family.
       0.658
SHK35147.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.642
SHK34778.1
Hypothetical protein.
  
     0.635
SHK09070.1
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat.
   
   0.632
SHK46181.1
Por secretion system C-terminal sorting domain-containing protein.
  
     0.630
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.