STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK57782.1Hypothetical protein. (365 aa)    
Predicted Functional Partners:
SHK43044.1
Glutamate synthase (NADH) large subunit.
    
  0.822
SHK57752.1
Hypothetical protein.
       0.773
SHK19836.1
Hypothetical protein.
  
     0.762
SHK19866.1
Hypothetical protein.
  
     0.740
SHK97218.1
Hypothetical protein.
  
     0.713
SHK19807.1
Hypothetical protein.
  
     0.705
SHK71177.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
  0.637
SHK63042.1
Hypothetical protein.
  
     0.636
SHK83804.1
Hypothetical protein.
  
     0.636
SHL09333.1
Hypothetical protein.
  
     0.636
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.