STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK58323.1Protein of unknown function. (73 aa)    
Predicted Functional Partners:
SHK58360.1
Outer membrane protein assembly factor BamA.
 
     0.827
SHK87113.1
Protein of unknown function.
  
     0.774
SHK96340.1
Tetratricopeptide repeat-containing protein.
  
     0.746
SHK83911.1
Hypothetical protein.
  
     0.739
SHK58390.1
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
       0.737
SHK96080.1
Type I restriction enzyme R protein N terminus (HSDR_N).
  
     0.733
SHL08654.1
RNA polymerase Rpb6; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.720
SHK58023.1
poly(A) polymerase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
     0.719
SHK15754.1
OstA-like protein.
  
     0.701
SHK49900.1
Protein of unknown function.
  
     0.696
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.