STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHK58999.1Hypothetical protein. (397 aa)    
Predicted Functional Partners:
SHK71346.1
Hypothetical protein.
  
     0.716
SHK05235.1
Histone H1-like protein Hc1.
  
     0.660
SHK07583.1
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.653
SHK36901.1
WD40-like Beta Propeller Repeat.
 
    0.622
SHK86636.1
Predicted component of the ribosome quality control (RQC) complex, YloA/Tae2 family, contains fibronectin-binding (FbpA) and DUF814 domains.
  
    0.608
SHK97624.1
GWxTD domain-containing protein.
 
     0.581
SHK59030.1
Aspartate aminotransferase.
  
    0.578
SHK12549.1
5-methylcytosine-specific restriction endonuclease McrA.
  
     0.576
SHK58918.1
Hypothetical protein.
 
     0.566
SHK43044.1
Glutamate synthase (NADH) large subunit.
  
  
 0.538
Your Current Organism:
Rhodothermus profundi
NCBI taxonomy Id: 633813
Other names: DSM 22212, JCM 15944, R. profundi, Rhodothermus profundi Marteinsson et al. 2010, Rhodothermus sp. PRI 2902, strain PRI 2902
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.